6TG1

Target information

RCSB PDB
6TG1
Title
Crystal Structure of EGFR T790M/V948R in Complex with Covalent Pyrrolopyrimidine 21b
Method
X-RAY DIFFRACTION
Resolution
1.6
Classification
TRANSFERASE
Organism
Homo sapiens
Protein
Epidermal growth factor receptor (P00533)    Looking for covalent inhibitors of this target ?
Year
2019
Publication Title
Targeting Her2-insYVMA with Covalent Inhibitors-A Focused Compound Screening and Structure-Based Design Approach.
Abstract

Mutated or amplified Her2 serves as a driver of non-small cell lung cancer or mediates resistance toward the inhibition of its family member epidermal growth factor receptor with small-molecule inhibitors. To date, small-molecule inhibitors targeting Her2 which can be used in clinical routine are lacking, and therefore, the development of novel inhibitors was undertaken. In this study, the well-established pyrrolopyrimidine scaffold was modified with structural motifs identified from a screening campaign with more than 1600 compounds, which were applied against wild-type Her2 and its mutant variant Her2-A775_G776insYVMA. The resulting inhibitors were designed to covalently target a reactive cysteine in the binding site of Her2 and were further optimized by means of structure-based drug design utilizing a set of obtained complex crystal structures. In addition, the analysis of binding kinetics and absorption, distribution, metabolism, and excretion parameters as well as mass spectrometry experiments and western blot analysis substantiated our approach.

External Link
RCSB PDB





Ligand information

HET
N82
Chain ID
A
HET Number
1101
Molecular Formula
C34H31N7O4
Structure
2D structure
IUPAC Name
N-[2-[2-(dimethylamino)ethoxy]-5-[4-[4-[(1,3-dioxoisoindolin-2-yl)methyl]anilino]-7H-pyrrolo[2,3-d]pyrimidin-5-yl]phenyl]prop-2-enamide
InChI
InChI=1S/C34H31N7O4/c1-4-29(42)39-27-17-22(11-14-28(27)45-16-15-40(2)3)26-18-35-31-30(26)32(37-20-36-31)38-23-12-9-21(10-13-23)19-41-33(43)24-7-5-6-8-25(24)34(41)44/h4-14,17-18,20H,1,15-16,19H2,2-3H3,(H,39,42)(H2,35,36,37,38)
InChI Key
IVWHTIHFZVYEIN-UHFFFAOYSA-N
Canonical SMILES
C=CC(=O)Nc1cc(-c2c[nH]c3ncnc(Nc4ccc(CN5C(=O)c6ccccc6C5=O)cc4)c23)ccc1OCCN(C)C
Bioactivity data
CI006611

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 797
Residue Chain
A
Interactions
Pharmacophore Model