6TFZ
Target information
- RCSB PDB
- 6TFZ
- Title
- Crystal Structure of EGFR T790M/V948R in Complex with Covalent Pyrrolopyrimidine 19
- Method
- X-RAY DIFFRACTION
- Resolution
- 1.8
- Classification
- TRANSFERASE
- Organism
- Homo sapiens
- Protein
- Epidermal growth factor receptor (P00533)    Looking for covalent inhibitors of this target ?
- Year
- 2019
- Publication Title
- Targeting Her2-insYVMA with Covalent Inhibitors-A Focused Compound Screening and Structure-Based Design Approach.
- Abstract
-
Mutated or amplified Her2 serves as a driver of non-small cell lung cancer or mediates resistance toward the inhibition of its family member epidermal growth factor receptor with small-molecule inhibitors. To date, small-molecule inhibitors targeting Her2 which can be used in clinical routine are lacking, and therefore, the development of novel inhibitors was undertaken. In this study, the well-established pyrrolopyrimidine scaffold was modified with structural motifs identified from a screening campaign with more than 1600 compounds, which were applied against wild-type Her2 and its mutant variant Her2-A775_G776insYVMA. The resulting inhibitors were designed to covalently target a reactive cysteine in the binding site of Her2 and were further optimized by means of structure-based drug design utilizing a set of obtained complex crystal structures. In addition, the analysis of binding kinetics and absorption, distribution, metabolism, and excretion parameters as well as mass spectrometry experiments and western blot analysis substantiated our approach.
- External Link
- RCSB PDB
Ligand information
- HET
- N7B
- Chain ID
- A
- HET Number
- 1101
- Molecular Formula
- C31H27N7O3
- Structure
-
- IUPAC Name
- N-[5-[4-[(1-benzylindazol-5-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-5-yl]-2-(2-hydroxyethoxy)phenyl]prop-2-enamide
- InChI
- InChI=1S/C31H27N7O3/c1-2-28(40)37-25-15-21(8-11-27(25)41-13-12-39)24-17-32-30-29(24)31(34-19-33-30)36-23-9-10-26-22(14-23)16-35-38(26)18-20-6-4-3-5-7-20/h2-11,14-17,19,39H,1,12-13,18H2,(H,37,40)(H2,32,33,34,36)
- InChI Key
- ZVCRDGKVDBJYMB-UHFFFAOYSA-N
- Canonical SMILES
- C=CC(=O)Nc1cc(-c2c[nH]c3ncnc(Nc4ccc5c(cnn5Cc5ccccc5)c4)c23)ccc1OCCO
- Bioactivity data
- CI006581
Covalent Binding
- Warhead
- Michael Acceptor
- Reaction Mechanism
- Michael Addition
- Residue
- CYS : 797
- Residue Chain
- A
- Interactions
- Pharmacophore Model