6J6M

Target information

RCSB PDB
6J6M
Title
Co-crystal structure of BTK kinase domain with Zanubrutinib
Method
X-RAY DIFFRACTION
Resolution
1.25
Classification
Transferase/Transferase inhibitor
Organism
Homo sapiens
Protein
Tyrosine-protein kinase BTK (Q06187)    Looking for covalent inhibitors of this target ?
Year
2019
Publication Title
Discovery of Zanubrutinib (BGB-3111), a Novel, Potent, and Selective Covalent Inhibitor of Bruton's Tyrosine Kinase.
Abstract

Aberrant activation of Bruton's tyrosine kinase (BTK) plays an important role in pathogenesis of B-cell lymphomas, suggesting that inhibition of BTK is useful in the treatment of hematological malignancies. The discovery of a more selective on-target covalent BTK inhibitor is of high value. Herein, we disclose the discovery and preclinical characterization of a potent, selective, and irreversible BTK inhibitor as our clinical candidate by using in vitro potency, selectivity, pharmacokinetics (PK), and in vivo pharmacodynamic for prioritizing compounds. Compound BGB-3111 ( 31a , Zanubrutinib) demonstrates (i) potent activity against BTK and excellent selectivity over other TEC, EGFR and Src family kinases, (ii) desirable ADME, excellent in vivo pharmacodynamic in mice and efficacy in OCI-LY10 xenograft models.

External Link
RCSB PDB





Ligand information

HET
BA0
Chain ID
A
HET Number
701
Molecular Formula
C27H29N5O3
Structure
2D structure
IUPAC Name
(7S)-2-(4-phenoxyphenyl)-7-(1-prop-2-enoyl-4-piperidyl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide
InChI
InChI=1S/C27H29N5O3/c1-2-23(33)31-16-13-18(14-17-31)22-12-15-29-27-24(26(28)34)25(30-32(22)27)19-8-10-21(11-9-19)35-20-6-4-3-5-7-20/h2-11,18,22,29H,1,12-17H2,(H2,28,34)/t22-/m0/s1
InChI Key
RNOAOAWBMHREKO-QFIPXVFZSA-N
Canonical SMILES
C=CC(=O)N1CCC(CC1)[C@@H]2CCNc(n23)c(C(=O)N)c(n3)-c4ccc(cc4)Oc5ccccc5
Bioactivity data
CI007292

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 481
Residue Chain
A
Interactions
Pharmacophore Model