6DI9

Target information

RCSB PDB
6DI9
Title
CRYSTAL STRUCTURE OF BTK IN COMPLEX WITH COVALENT INHIBITOR
Method
X-RAY DIFFRACTION
Resolution
1.25
Classification
TRANSFERASE/TRANSFERASE Inhibitor
Organism
Homo sapiens
Protein
Tyrosine-protein kinase BTK (Q06187)    Looking for covalent inhibitors of this target ?
Year
2018
Publication Title
Discovery of potent, highly selective covalent irreversible BTK inhibitors from a fragment hit.
Abstract

Bruton's Tyrosine Kinase (BTK) is a member of the TEC kinase family that is expressed in cells of hematopoietic lineage (e.g., in B cells, macrophages, monocytes, and mast cells). Small molecule covalent irreversible BTK inhibitor targeting Cys481 within the ATP-binding pocket, for example ibrutinib, has been applied in the treatment of B-cell malignancies. Starting from a fragment hit, we discovered a novel series of potent covalent irreversible BTK inhibitors that occupy selectivity pocket of the active site of the BTK kinase domain. Guided by X-ray structures and a fragment-based drug design (FBDD) approach, we generated molecules showing comparable cellular potency to ibrutinib and higher kinome selectivity against undesirable off-targets like EGFR.

External Link
RCSB PDB





Ligand information

HET
GJJ
Chain ID
A
HET Number
701
Molecular Formula
C24H30N6O3
Structure
2D structure
IUPAC Name
2-[4-(tert-butylcarbamoyl)anilino]-6-[(3S)-3-(prop-2-enoylamino)pyrrolidin-1-yl]pyridine-3-carboxamide
InChI
InChI=1S/C24H30N6O3/c1-5-20(31)26-17-12-13-30(14-17)19-11-10-18(21(25)32)22(28-19)27-16-8-6-15(7-9-16)23(33)29-24(2,3)4/h5-11,17H,1,12-14H2,2-4H3,(H2,25,32)(H,26,31)(H,27,28)(H,29,33)/t17-/m0/s1
InChI Key
AYRMUHGKVWLINC-KRWDZBQOSA-N
Canonical SMILES
CC(C)(C)NC(=O)c1ccc(cc1)Nc2c(C(=O)N)ccc(n2)N3CC[C@@H](C3)NC(=O)C=C
Bioactivity data
CI004494

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 481
Residue Chain
A
Interactions
Pharmacophore Model