5UWD

Target information

RCSB PDB
5UWD
Title
Crystal structure of EGFR kinase domain (L858R, T790M, V948R) in complex with the covalent inhibitor CO-1686
Method
X-RAY DIFFRACTION
Resolution
3.06
Classification
TRANSFERASE/TRANSFERASE INHIBITOR
Organism
Homo sapiens
Protein
Epidermal growth factor receptor (P00533)    Looking for covalent inhibitors of this target ?
Year
2017
Publication Title
Proteome-wide Map of Targets of T790M-EGFR-Directed Covalent Inhibitors.
Abstract

Patients with non-small cell lung cancers that have kinase-activating epidermal growth factor receptor (EGFR) mutations are highly responsive to first- and?second-generation EGFR inhibitors. However, these?patients often relapse due to a secondary, drug-resistant mutation in EGFR whereby the gatekeeper threonine is converted to methionine (T790M). Several third-generation EGFR inhibitors have been developed that irreversibly inactivate T790M-EGFR while sparing wild-type EGFR, thus reducing epithelium-based toxicities. Using chemical proteomics, we show here that individual T790M-EGFR inhibitors exhibit strikingly distinct off-target profiles in human cells. The FDA-approved drug osimertinib (AZD9291), in particular, was found to covalently modify cathepsins in cell and animal models, which correlated with lysosomal accumulation of the drug. Our findings thus show how chemical proteomics can be used to differentiate covalent kinase inhibitors based on global selectivity profiles in living systems and identify specific off-targets of?these inhibitors that may affect drug activity and safety.

External Link
RCSB PDB





Ligand information

HET
8OV
Chain ID
A
HET Number
9001
Molecular Formula
C27H28F3N7O3
Structure
2D structure
IUPAC Name
N-[3-[[2-[4-(4-acetylpiperazin-1-yl)-2-methoxy-anilino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide
InChI
InChI=1S/C27H28F3N7O3/c1-4-24(39)32-18-6-5-7-19(14-18)33-25-21(27(28,29)30)16-31-26(35-25)34-22-9-8-20(15-23(22)40-3)37-12-10-36(11-13-37)17(2)38/h4-9,14-16H,1,10-13H2,2-3H3,(H,32,39)(H2,31,33,34,35)
InChI Key
HUFOZJXAKZVRNJ-UHFFFAOYSA-N
Canonical SMILES
C=CC(=O)Nc1cccc(Nc2nc(Nc3ccc(N4CCN(C(C)=O)CC4)cc3OC)ncc2C(F)(F)F)c1
Bioactivity data
CI001204

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 797
Residue Chain
A
Interactions
Pharmacophore Model