5JK3

Target information

RCSB PDB
5JK3
Title
Crystal structure of TL11-128 bound to TAK1-TAB1
Method
X-RAY DIFFRACTION
Resolution
2.37
Classification
Transferase/Transferase Inhibitor
Organism
Homo sapiens
Protein
Mitogen-activated protein kinase kinase kinase 7 (O43318)    Looking for covalent inhibitors of this target ?
Year
2016
Publication Title
Structure-guided development of covalent TAK1 inhibitors.
Abstract

TAK1 (transforming growth factor-??-activated kinase 1) is an essential intracellular mediator of cytokine and growth factor signaling and a potential therapeutic target for the treatment of immune diseases and cancer. Herein we report development of a series of 2,4-disubstituted pyrimidine covalent TAK1 inhibitors that target Cys174, a residue immediately adjacent to the 'DFG-motif' of the kinase activation loop. Co-crystal structures of TAK1 with candidate compounds enabled iterative rounds of structure-based design and biological testing to arrive at optimized compounds. Lead compounds such as 2 and 10 showed greater than 10-fold biochemical selectivity for TAK1 over the closely related kinases MEK1 and ERK1 which possess an equivalently positioned cysteine residue. These compounds are smaller, more easily synthesized, and exhibit a different spectrum of kinase selectivity relative to previously reported macrocyclic natural product TAK1 inhibitors such as 5Z-7-oxozeanol.

External Link
RCSB PDB





Ligand information

HET
6L4
Chain ID
A
HET Number
601
Molecular Formula
C17H15ClN6O2
Structure
2D structure
IUPAC Name
N-[2-[5-chloro-2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]oxyphenyl]prop-2-enamide
InChI
InChI=1S/C17H15ClN6O2/c1-3-15(25)22-13-6-4-5-7-14(13)26-16-12(18)9-19-17(23-16)21-11-8-20-24(2)10-11/h3-10H,1H2,2H3,(H,22,25)(H,19,21,23)
InChI Key
QXQGHCJUTRTRLJ-UHFFFAOYSA-N
Canonical SMILES
Cn1cc(cn1)Nc2ncc(Cl)c(n2)Oc3ccccc3NC(=O)C=C
Bioactivity data
CI001934

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 174
Residue Chain
A
Interactions
Pharmacophore Model