5J8I

Target information

RCSB PDB
5J8I
Title
Crystal structure of TL11-113 bound to TAK1-TAB1
Method
X-RAY DIFFRACTION
Resolution
2.4
Classification
TRANSFERASE/TRANSFERASE inhibitor
Organism
Homo sapiens
Protein
Mitogen-activated protein kinase kinase kinase 7 (O43318)    Looking for covalent inhibitors of this target ?
Year
2016
Publication Title
Structure-guided development of covalent TAK1 inhibitors.
Abstract

TAK1 (transforming growth factor-??-activated kinase 1) is an essential intracellular mediator of cytokine and growth factor signaling and a potential therapeutic target for the treatment of immune diseases and cancer. Herein we report development of a series of 2,4-disubstituted pyrimidine covalent TAK1 inhibitors that target Cys174, a residue immediately adjacent to the 'DFG-motif' of the kinase activation loop. Co-crystal structures of TAK1 with candidate compounds enabled iterative rounds of structure-based design and biological testing to arrive at optimized compounds. Lead compounds such as 2 and 10 showed greater than 10-fold biochemical selectivity for TAK1 over the closely related kinases MEK1 and ERK1 which possess an equivalently positioned cysteine residue. These compounds are smaller, more easily synthesized, and exhibit a different spectrum of kinase selectivity relative to previously reported macrocyclic natural product TAK1 inhibitors such as 5Z-7-oxozeanol.

External Link
RCSB PDB





Ligand information

HET
6H4
Chain ID
A
HET Number
601
Molecular Formula
C24H25ClN6O2
Structure
2D structure
IUPAC Name
N-[2-[5-chloro-2-[4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl]oxyphenyl]prop-2-enamide
InChI
InChI=1S/C24H25ClN6O2/c1-3-22(32)28-20-6-4-5-7-21(20)33-23-19(25)16-26-24(29-23)27-17-8-10-18(11-9-17)31-14-12-30(2)13-15-31/h3-11,16H,1,12-15H2,2H3,(H,28,32)(H,26,27,29)
InChI Key
WOQNVLPDIGPVKR-UHFFFAOYSA-N
Canonical SMILES
CN1CCN(CC1)c1ccc(Nc2ncc(Cl)c(Oc3ccccc3NC(=O)C=C)n2)cc1
Bioactivity data
CI001933

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 174
Residue Chain
A
Interactions
Pharmacophore Model