4ZZO

Target information

RCSB PDB
4ZZO
Title
Human ERK2 in complex with an irreversible inhibitor
Method
X-RAY DIFFRACTION
Resolution
1.63
Classification
TRANSFERASE
Organism
Homo sapiens
Protein
Mitogen-activated protein kinase 1 (P28482)    Looking for covalent inhibitors of this target ?
Year
2015
Publication Title
Structure-Guided Design of Highly Selective and Potent Covalent Inhibitors of Erk1/2.
Abstract

The RAS/RAF/MEK/ERK signaling pathway has been targeted with a number of small molecule inhibitors in oncology clinical development across multiple disease indications. Importantly, cell lines with acquired resistance to B-RAF and MEK inhibitors have been shown to maintain sensitivity to ERK1/2 inhibition by small molecule inhibitors. There are a number of selective, noncovalent ERK1/2 inhibitors reported along with the promiscuous hypothemycin (and related analogues) that act via a covalent mechanism of action. This article reports the identification of multiple series of highly selective covalent ERK1/2 inhibitors informed by structure-based drug design (SBDD). As a starting point for these covalent inhibitors, reported ERK1/2 inhibitors and a chemical series identified via high-throughput screening were exploited. These approaches resulted in the identification of selective covalent tool compounds for potential in vitro and in vivo studies to assess the risks and or benefits of targeting this pathway through such a mechanism of action.

External Link
RCSB PDB





Ligand information

HET
CQ3
Chain ID
A
HET Number
1357
Molecular Formula
C18H20ClN5O2
Structure
2D structure
IUPAC Name
N-[2-[[5-chloro-2-(tetrahydropyran-4-ylamino)pyrimidin-4-yl]amino]phenyl]prop-2-enamide
InChI
InChI=1S/C18H20ClN5O2/c1-2-16(25)22-14-5-3-4-6-15(14)23-17-13(19)11-20-18(24-17)21-12-7-9-26-10-8-12/h2-6,11-12H,1,7-10H2,(H,22,25)(H2,20,21,23,24)
InChI Key
JXDQJNOCFPWRNA-UHFFFAOYSA-N
Canonical SMILES
C1COCCC1Nc2ncc(Cl)c(n2)Nc3ccccc3NC(=O)C=C
Bioactivity data
CI001540

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 166
Residue Chain
A
Interactions
Pharmacophore Model