4LRM

Target information

RCSB PDB
4LRM
Title
EGFR D770_N771insNPG in complex with PD168393
Method
X-RAY DIFFRACTION
Resolution
3.53
Classification
transferase/transferase inhibitor
Organism
Homo sapiens
Protein
Epidermal growth factor receptor (P00533)    Looking for covalent inhibitors of this target ?
Year
2013
Publication Title
Structural, Biochemical, and Clinical Characterization of Epidermal Growth Factor Receptor (EGFR) Exon 20 Insertion Mutations in Lung Cancer.
Abstract

Epidermal growth factor receptor (EGFR) gene mutations (G719X, exon 19 deletions/insertions, L858R, and L861Q) predict favorable responses to EGFR tyrosine kinase inhibitors (TKIs) in advanced non-small cell lung cancer (NSCLC). However, EGFR exon 20 insertion mutations (~10% of all EGFR mutations) are generally associated with insensitivity to available TKIs (gefitinib, erlotinib, and afatinib). The basis of this primary resistance is poorly understood. We studied a broad subset of exon 20 insertion mutations, comparing in vitro TKI sensitivity with responses to gefitinib and erlotinib in NSCLC patients, and found that most are resistant to EGFR TKIs. The crystal structure of a representative TKI-insensitive mutant (D770_N771insNPG) reveals an unaltered adenosine triphosphate-binding pocket, and the inserted residues form a wedge at the end of the C helix that promotes the active kinase conformation. Unlike EGFR-L858R, D770_N771insNPG activates EGFR without increasing its affinity for EGFR TKIs. Unexpectedly, we find that EGFR-A763_Y764insFQEA is highly sensitive to EGFR TKIs in vitro, and patients whose NSCLCs harbor this mutation respond to erlotinib. Analysis of the A763_Y764insFQEA mutant indicates that the inserted residues shift the register of the C helix in the N-terminal direction, altering the structure in the region that is also affected by the TKI-sensitive EGFR-L858R. Our studies reveal intricate differences between EGFR mutations, their biology, and their response to EGFR TKIs.

External Link
RCSB PDB





Ligand information

HET
YUN
Chain ID
D
HET Number
1101
Molecular Formula
C17H13BrN4O
Structure
2D structure
IUPAC Name
N-[4-(3-bromoanilino)quinazolin-6-yl]prop-2-enamide
InChI
InChI=1S/C17H13BrN4O/c1-2-16(23)21-13-6-7-15-14(9-13)17(20-10-19-15)22-12-5-3-4-11(18)8-12/h2-10H,1H2,(H,21,23)(H,19,20,22)
InChI Key
HTUBKQUPEREOGA-UHFFFAOYSA-N
Canonical SMILES
C=CC(=O)Nc1ccc2ncnc(Nc3cccc(Br)c3)c2c1
Bioactivity data
CI002137

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 800
Residue Chain
D
Interactions
Pharmacophore Model