4I24

Target information

RCSB PDB
4I24
Title
Structure of T790M EGFR kinase domain co-crystallized with dacomitinib
Method
X-RAY DIFFRACTION
Resolution
1.8
Classification
TRANSFERASE
Organism
Homo sapiens
Protein
Epidermal growth factor receptor (P00533)    Looking for covalent inhibitors of this target ?
Year
2012
Publication Title
Insights into the Aberrant Activity of Mutant EGFR Kinase Domain and Drug Recognition.
Abstract

The oncogenicity of the L858R mutant form of the epidermal growth factor receptor (EGFR) in non-small-cell lung cancer is thought to be due to the constitutive activation of its kinase domain. The selectivity of the marketed drugs gefitinib and erlotinib for L858R mutant is attributed to their specific recognition of the active kinase and to weaker ATP binding by L858R EGFR. We present crystal structures showing that neither L858R nor the drug-resistant L858R+T790M EGFR kinase domain is in the constitutively active conformation. Additional co-crystal structures show that gefitinib and dacomitinib, an irreversible anilinoquinazoline derivative currently in clinical development, may not be conformation specific for the active state of the enzyme. Structural data further reveal the potential mode of recognition of one of the autophosphorylation sites in the C-terminal tail, Tyr-1016, by the kinase domain. Biochemical and biophysical evidence suggest that the oncogenic mutations impact the conformational dynamics of the enzyme.

External Link
RCSB PDB





Ligand information

HET
1C9
Chain ID
A
HET Number
9001
Molecular Formula
C24H25ClFN5O2
Structure
2D structure
IUPAC Name
(E)-N-[4-(3-chloro-4-fluoro-anilino)-7-methoxy-quinazolin-6-yl]-4-(1-piperidyl)but-2-enamide
InChI
InChI=1S/C24H25ClFN5O2/c1-33-22-14-20-17(24(28-15-27-20)29-16-7-8-19(26)18(25)12-16)13-21(22)30-23(32)6-5-11-31-9-3-2-4-10-31/h5-8,12-15H,2-4,9-11H2,1H3,(H,30,32)(H,27,28,29)/b6-5+
InChI Key
LVXJQMNHJWSHET-AATRIKPKSA-N
Canonical SMILES
COc1cc2ncnc(Nc3ccc(F)c(Cl)c3)c2cc1NC(=O)\C=C\CN1CCCCC1
Bioactivity data
CI000496

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 797
Residue Chain
A
Interactions
Pharmacophore Model