3LOK

Target information

RCSB PDB
3LOK
Title
Drug resistant cSrc kinase domain in complex with covalent inhibitor PD168393
Method
X-RAY DIFFRACTION
Resolution
2.48
Classification
TRANSFERASE/TRANSFERASE INHIBITOR
Organism
Gallus gallus
Protein
Proto-oncogene tyrosine-protein kinase Src (P00523)    Looking for covalent inhibitors of this target ?
Year
2010
Publication Title
Characterization of irreversible kinase inhibitors by directly detecting covalent bond formation: a tool for dissecting kinase drug resistance
Abstract

Targeting protein kinases in cancer therapy with irreversible small-molecule inhibitors is moving to the forefront of kinase-inhibitor research and is thought to be an effective means of overcoming mutation-associated drug resistance in epidermal growth factor receptor kinase (EGFR). We generated a detection technique that allows direct measurements of covalent bond formation without relying on kinase activity, thereby allowing the straightforward investigation of the influence of steric clashes on covalent inhibitors in different resistant kinase mutants. The obtained results are discussed together with structural biology and biochemical studies of catalytic activity in both wild-type and gatekeeper mutated kinase variants to draw conclusions about the impact of steric hindrance and increased catalytic activity in drug-resistant kinase variants.

External Link
RCSB PDB





Ligand information

HET
DJK
Chain ID
A
HET Number
1345
Molecular Formula
C17H13BrN4O
Structure
2D structure
IUPAC Name
N-[4-(3-bromoanilino)quinazolin-6-yl]prop-2-enamide
InChI
InChI=1S/C17H13BrN4O/c1-2-16(23)21-13-6-7-15-14(9-13)17(20-10-19-15)22-12-5-3-4-11(18)8-12/h2-10H,1H2,(H,21,23)(H,19,20,22)
InChI Key
HTUBKQUPEREOGA-UHFFFAOYSA-N
Canonical SMILES
C=CC(=O)Nc(c1)ccc(c12)ncnc2Nc3cccc(Br)c3
Bioactivity data
CI002137

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 345
Residue Chain
A
Interactions
Pharmacophore Model