2QQ7

Target information

RCSB PDB
2QQ7
Title
Crystal structure of drug resistant SRC kinase domain with irreversible inhibitor
Method
X-RAY DIFFRACTION
Resolution
2.38
Classification
TRANSFERASE
Organism
Gallus gallus
Protein
Proto-oncogene tyrosine-protein kinase Src (P00523)    Looking for covalent inhibitors of this target ?
Year
2007
Publication Title
Structural insights into how irreversible inhibitors can overcome drug resistance in EGFR.
Abstract

Resistance to kinase-targeted cancer drugs has recently been linked to a single point mutation in the ATP binding site of the kinase. In EGFR, the crucial Thr790 gatekeeper residue is mutated to a Met and prevents reversible ATP competitive inhibitors from binding. Irreversible 4-(phenylamino)quinazolines have been shown to overcome this drug resistance and are currently in clinical trials. In order to obtain a detailed structural understanding of how irreversible inhibitors overcome drug resistance, we used Src kinase as a model system for drug resistant EGFR-T790M. We report the first crystal structure of a drug resistant kinase in complex with an irreversible inhibitor. This 4-(phenylamino)quinazoline inhibits wild type and drug resistant EGFR in vitro at low nM concentrations. The co-crystal structure of drug resistant cSrc-T338M kinase domain provides the structural basis of this activity.

External Link
RCSB PDB





Ligand information

HET
SR2
Chain ID
A
HET Number
1345
Molecular Formula
C20H20BrN5O
Structure
2D structure
IUPAC Name
(E)-N-[4-(3-bromoanilino)quinazolin-6-yl]-4-(dimethylamino)but-2-enamide
InChI
InChI=1S/C20H20BrN5O/c1-26(2)10-4-7-19(27)24-16-8-9-18-17(12-16)20(23-13-22-18)25-15-6-3-5-14(21)11-15/h3-9,11-13H,10H2,1-2H3,(H,24,27)(H,22,23,25)/b7-4+
InChI Key
ZCIXBBSRVLSRJQ-QPJJXVBHSA-N
Canonical SMILES
CN(C)C\C=C\C(=O)Nc1ccc2ncnc(Nc3cccc(Br)c3)c2c1
Bioactivity data
CI002234

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 345
Residue Chain
A
Interactions
Pharmacophore Model